Hi Elaine, I have tried the "reset" command. It works. Thank you very much! Phan ________________________________ From: Elaine Meng <meng@cgl.ucsf.edu> Sent: Friday, October 20, 2017 4:41:34 PM To: Phan Trieu Truong Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] Trouble with Volume surface and active model not aligned Hi Phan, I’m not sure what happened either, since your images show the “A” (active for motion) boxes in the Model Panel are checked for both the molecule and the orbitals, meaning that using the mouse should move both of them together. You could try command: reset … to put them back together. If that doesn’t work, you may have to start over by quitting and reopening the files. However, if you didn’t uncheck the “A” boxes or the “Active models” boxes below the Command Line, mouse movements should always move them both together. Maybe you accidentally had one of the A(ctive) boxes unchecked and moved the other model. In that case, reset will work. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 20, 2017, at 8:57 AM, Phan Trieu Truong <truongp@uga.edu> wrote:
Hi,
I have been using Chimera to visualize MO orbital on molecules from ORCA calculations. I have been able to visualize the MO orbitals as a surface volume from cube files. However, I just found out that when I try to reorient the molecule with the surface volume, they are no longer aligned. I don't know what I did to cause this. Any help is much appreciated.
Attached is the picture of the molecules before and after I tried to reorient the molecule with the surface volume.
Thank you, Phan <Before and after reorientation.jpg.png>_______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users