23 Jan
2008
23 Jan
'08
10:21 p.m.
Hi James, I just added a Chimera command molmap to make a density map from an atomic model. It sums Gaussians for each atom. If your pseudo-atom saxs model is opened as model id 0 you would run it like molmap #0 3.75 and it will create the map and display it with volume viewer. Here the resolution is 3.75 and you probably want to try other values. You can add a gridSpacing parameter to get smoother appearance (defaults to 1/3 resolution). This command is not yet documented. It has been in Chimera builds for a few days but you should try tonight's build (if it succeeds) because I forgot to include some C++ optimization in earlier builds. http://www.cgl.ucsf.edu/chimera/alpha-downloads.html Tom