Hi Pavithra, Thanks for reporting the error via the bug-reporting mechanism. Since this problem seems to be affecting no one else, we'll work on it via the bug report rather than via the users list. Expect mail via the bug report soon. --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On Oct 23, 2013, at 7:12 PM, Pavithra <meetpavithramsc@gmail.com> wrote:
Dear Dr. Elaine,
Thank you for the reply. I tried to report the bug before I mailed this group. To be exact for the past two days, I tried to report the bug. But, It didn't work. The preference I was talking about is the "web access" in which i changed the http proxy true and tried. I have tried Fetching pdb, Emdb, which was successful. But, with uniprot I'm getting the previously mentioned error. I have tried different uniprot Ids but I get the same error.
On Thu, Oct 24, 2013 at 10:18 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote: Hi Pavithra, I can't reproduce this problem -- the fetch of UniProt oprd_human is successful for me in Chimera 1.7 and newer versions of Chimera. I don't know what preference you are talking about... if you meant the download directory, that only specifies a local directory for saving the files and should not have "http" in it.
In general, you should report problems using the Chimera menu: Help... Report a Bug instead of sending email to this address. In the report form, you can include a description of what you did and your email (if you want feedback). Some other things to try and maybe mention in the report: can you fetch anything from UniProt? Can you fetch anything from any database (PDB, etc.)? Thanks Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 23, 2013, at 6:01 PM, Pavithra wrote:
Dear chimera users,
I'm trying comparative modeling tutorial in chimera tutorials and I'm getting the following error in using fetch uniprot id.
Steps followed: Menu--> fetch by ID--> selected uniprot--> "oprd_human" "P41143" (tried all combinations)
Error:
BadStatusLine: ''
File "C:\Program Files\Chimera 1.7\bin\lib\httplib.py", line 371, in _read_status raise BadStatusLine(line)
See reply log for Python traceback.
I tried changing the preference to use "http" but nothing fix it. please help.
-- regards, Pavithra.K.B. _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
-- regards, Pavithra.K.B. _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users