Hi Marek, Without an example, I could only suggest trying something like select :515.water or select :515 & solvent If that doesn't work, I would need an example file (could send to just me if you don't want to send to the whole list). Best, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Dec 19, 2011, at 6:27 PM, Marek Maly wrote:
Hello, it seems that if some amber trajectory but also PDB containing solvated structure/s is loaded into Chimera, there is impossible to select by residue number (using command SELECT in command line or by dialog SELECT->ATOM SPECIFIER) any solvent reside (at least in case of WAT solvent).
Am I right ?
Perhaps it is possible but maybe with some more complicated command than the usual
select :N
where N is the residue number.
Thanks in advance for any comments !
Best wishes,
Marek
PS: I am using alpha version from 18th November, but I remember this problem also from previous versions.