Dear Juan, Take a look at the command “vop cover” with box, ibox, or fbox option. I think that will do what you want: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/vop.html#cover> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Jan 18, 2015, at 7:55 AM, Juan Luis Loredo Varela <jlvl500@york.ac.uk> wrote:
Dear Chimera users When I use the Segment map option to save a specific fragment as .mrc file, Chimera uses the minimal box containing the segment. Does anyone know how to modify the dimensions of a density map to have it in a cubic box that can be used in Flex-EM? Thanks Juan