Hi Tamas, See command “molmap” <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/molmap.html> Also, fitting atoms to a density map (Fit in Map GUI or “fitmap” command) has an option to simulate a map from the atoms and do map-map fitting. <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/fitmaps/fitmaps.ht...> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/fitmap.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 6, 2018, at 2:48 AM, Tamas Hegedus <tamas@hegelab.org> wrote:
Hi, Is there an option (command, tool) in Chimera to calculate the theoretical electrondensity map for an all atom protein model?
Similar to the MDFF tool in VMD. https://www.ks.uiuc.edu/Training/Tutorials/science/mdff/tutorial_mdff-html/n...
Thanks, Tamas