
I'm seeing some very odd results coming from the measure buriedArea command if I use different values for probeRaduis and then grep for WARNINGs I get the following results: probeRadius # of WARNINGs 1.50 = 12 1.40 = 4 1.39 = 14 1.35 = 59 1.30 = 3 1.20 = 0 Here are some examples of the types of warnings I'm seeing: WARNING: check_SES_edge: weird case, 1 probe full2 and not full1 WARNING: class_arete2: warning hole in a reentrant face 1735 WARNING: check_SES_edge: weird case, 1 probe full2 and not full1 WARNING: check_SES_edge: weird case, 1 probe full2 and not full1 WARNING: class_arete2: warning hole in a reentrant face 2557 WARNING: check_SES_edge: weird case, 1 probe full2 and not full1 WARNING: class_arete2: warning hole in a reentrant face 1836 WARNING: check_SES_edge: weird case, 1 probe full2 and not full1 WARNING: check_SES_edge: weird case, 1 probe full2 and not full1 WARNING: class_arete2: warning hole in a reentrant face 2090 WARNING: class_arete2: warning hole in a reentrant face 1925 WARNING: compute_SES_area: ERROR: Solide angle (-1.972093) for contact face 3142 too large or too small Should I be concerned? Another unusual thing is that for certain calculations I get some crazy answers. For example the following command measure buriedArea '#0:.A,.B & #0:10.Dz<8' #0:10.D probeRadius 1.4 vertexDensity 2 outputs: B1SES = -583.491, B2SES = 51.4762, BaveSES = -266.007 but the same command with the probeRadius changed to 1.37 measure buriedArea '#0:.A,.B & #0:10.Dz<8' #0:10.D probeRadius 1.37 vertexDensity 2 outputs: B1SES = 53.9334, B2SES = 51.7969, BaveSES = 52.8652 Why would B1SES be so radically different for these two measurements? Thanks, Scott ps When doing these calculations Chimera randomly crashes with the following mscalc crash report: Process: mscalc [25532] Path: /Applications/Chimera-1.5b.app/Contents/Resources/bin/mscalc Identifier: mscalc Version: ??? (???) Code Type: X86-64 (Native) Parent Process: python2.6 [25482] Date/Time: 2010-04-27 17:23:08.864 -0700 OS Version: Mac OS X 10.6.3 (10D573) Report Version: 6 Interval Since Last Report: 402 sec Crashes Since Last Report: 1 Per-App Crashes Since Last Report: 1 Anonymous UUID: D0B1026B-AD5E-454C-8E35-49CCF7598339 Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Crashed Thread: 0 Dispatch queue: com.apple.main-thread Application Specific Information: abort() called Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 libSystem.B.dylib 0x00007fff83cc7886 __kill + 10 1 libSystem.B.dylib 0x00007fff83d67eae abort + 83 2 libSystem.B.dylib 0x00007fff83c7fa75 free + 128 3 mscalc 0x00000001000218e5 MS_delete_SES_face + 920 4 mscalc 0x00000001000361f4 MS_update_ses + 919 5 mscalc 0x0000000100034f68 MS_restart_from_ses + 613 6 mscalc 0x0000000100036963 MS_update_ses + 2822 7 mscalc 0x0000000100037d94 MS_restart_from_triangulation + 591 8 mscalc 0x0000000100046c66 MS_triangulate_SES_component + 925 9 mscalc 0x00000001000066f6 MS_compute_surface + 443 10 mscalc 0x0000000100000ea2 main + 382 11 mscalc 0x0000000100000d1c start + 52 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000000000001 rcx: 0x00007fff5fbfd998 rdx: 0x0000000000000000 rdi: 0x00000000000063bc rsi: 0x0000000000000006 rbp: 0x00007fff5fbfd9b0 rsp: 0x00007fff5fbfd998 r8: 0x0000000000000e03 r9: 0x0000000000000000 r10: 0x00007fff83cc38ca r11: 0x0000000000000206 r12: 0x00000001001e4000 r13: 0x0000000100200000 r14: 0x0000000000000000 r15: 0x00000001004f7c70 rip: 0x00007fff83cc7886 rfl: 0x0000000000000206 cr2: 0x000000010022a000 Binary Images: 0x100000000 - 0x10004eff7 +mscalc ??? (???) <AF86E566-5546-A8C8-DE97-4A16408CB1BC> /Applications/Chimera-1.5b.app/Contents/Resources/bin/mscalc 0x7fff5fc00000 - 0x7fff5fc3bdef dyld 132.1 (???) <B633F790-4DDB-53CD-7ACF-2A3682BCEA9F> /usr/lib/dyld 0x7fff83c78000 - 0x7fff83e37ff7 libSystem.B.dylib 125.0.1 (compatibility 1.0.0) <CB9A4929-61AF-DE71-5635-133E9EC95783> /usr/lib/libSystem.B.dylib 0x7fff885a7000 - 0x7fff885abff7 libmathCommon.A.dylib 315.0.0 (compatibility 1.0.0) <95718673-FEEE-B6ED-B127-BCDBDB60D4E5> /usr/lib/system/libmathCommon.A.dylib 0x7fffffe00000 - 0x7fffffe01fff libSystem.B.dylib ??? (???) <CB9A4929-61AF-DE71-5635-133E9EC95783> /usr/lib/libSystem.B.dylib Model: MacPro1,1, BootROM MP11.005C.B08, 4 processors, Dual-Core Intel Xeon, 2.66 GHz, 14 GB, SMC 1.7f10 Graphics: ATI Radeon X1900 XT, ATY,RadeonX1900, PCIe, 512 MB Memory Module: global_name AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x87), Broadcom BCM43xx 1.0 (5.10.91.27) Bluetooth: Version 2.3.1f4, 2 service, 19 devices, 1 incoming serial ports Network Service: Built-in Ethernet 2, Ethernet, en1 PCI Card: ATY,RadeonX1900, Display, Slot-1 Serial ATA Device: ST3250824AS P, 232.89 GB Serial ATA Device: WDC WD2500JD-00HBC0, 232.89 GB Serial ATA Device: WDC WD1002FBYS-01A6B0, 931.51 GB Serial ATA Device: WDC WD1002FBYS-01A6B0, 931.51 GB Parallel ATA Device: SONY DVD RW DW-D150A USB Device: Hub, 0x05ac (Apple Inc.), 0x9131, 0xfd400000 USB Device: iPhone, 0x05ac (Apple Inc.), 0x1292, 0xfd430000 USB Device: Keyboard Hub, 0x05ac (Apple Inc.), 0x1005, 0xfd410000 USB Device: Apple Keyboard, 0x05ac (Apple Inc.), 0x021d, 0xfd412000 USB Device: Apple Cinema HD Display, 0x05ac (Apple Inc.), 0x9223, 0xfd420000 USB Device: Hub, 0x05ac (Apple Inc.), 0x9122, 0xfd300000 USB Device: Apple Cinema HD Display, 0x05ac (Apple Inc.), 0x921e, 0xfd320000 USB Device: USB Receiver, 0x046d (Logitech Inc.), 0xc525, 0x1d200000 USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8206, 0x5d200000 USB Device: Back-UPS CS 500 FW:806.q5.D USB FW:q5, 0x051d (American Power Conversion), 0x0002, 0x5d100000 FireWire Device: built-in_hub, Up to 800 Mb/sec FireWire Device: unknown_device, Unknown