16 Oct
2008
16 Oct
'08
10:48 a.m.
On Oct 16, 2008, at 10:31 AM, Beale, John wrote:
Is there a way in Chimera to generate interresidue contact maps for proteins from MD data?
No, sorry. The closest you can get I think is to run findclash every frame and write out a list of contacts, which doesn't seem very good. VMD has a plugin that does exactly what you're asking for though: Contact Map Plugin, Version 1.1 --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu