Thank you for the response. Ab and Ag are not elements in this project-Ab not at all. They are referencing antigens and antibodies. I was creating a skeleton for my specific project but decided to try the template I found first to see what should happen. I wanted to see the interface of an antigen and an antibody. Kimberley N. Poland, AA, BA, BA, MS Doctoral Student Department of Chemistry & Biochemistry Coulter Hall Room 283 601-692-8577
On May 7, 2018, at 5:26 PM, David Gae <ddgae@ucdavis.edu> wrote:
Dear Kim,
I think you have a typo- you are missing () after your object createAb
Btw, like Dr. Meng said it is really confusing what you are trying to do because the script you provided is for a water molecule.
On May 7, 2018, at 8:20 AM, Kimberley Perry <knperry@go.olemiss.edu> wrote:
Elaine, thank you so much for responding to me! Granted, I am new to Python, but I have a biochemistry (undergrad degree) and physical chemistry (working on PhD now) working knowledge. I would like to look at the interactions of Ab and Ag as they may apply to drug discovery. It is for a final project in Python, which I've only had one semester of. I downloaded Chimera according to your instructions. I ran the .py file without error, but a visual never displays.
Kim
On Mon, May 7, 2018 at 10:15 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote: Hi Kim, I have no idea what you mean by “your online water example” as it doesn’t sound like something we wrote… would need much more information on what you did, and what you were trying to do, to be able to comment on whether it was right or not.
The Chimera tutorials are here and/or in the Chimera Help menu:
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/frametut.html> <http://www.rbvi.ucsf.edu/Outreach/Tutorials/GettingStarted.html> <http://www.rbvi.ucsf.edu/chimera/tutorials.html>
Good luck, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 6, 2018, at 7:11 PM, Kimberley Perry <knperry@go.olemiss.edu> wrote:
Hello! I am trying to model molecular structures for a Python course I am taking. I tried your online water example, and it looked like it ran, but I am not seeing the structure. Am I doing something wrong?
Kim
<Final Exam.py>_______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users