Hi Shensuke, Chimera does not calculate electrostatic potential. The DelPhiController tool works with the delphi program, but you have to get the delphi program separately from the Honig group. Here is more information, including how to use that tool after you get DelPhi: http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/ delphicontroller/delphicontroller.html Best, Elaine ----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html On Jun 17, 2007, at 10:50 PM, Shunsuke Meshitsuka wrote:
Dear Doctors,
I want to calculate surface potential by Delphi type calculation. I have tried from Menu bar, tool --- DelPhi ,but have not obtained the results.
Please let me know the way to use them for the calculation of surface potentials from a PDB fie in linux version of chimera-1.2417.
Shunsuke Meshitsuka D.Sci., D.Med.
Tottori University Graduate School of Medical Science Institute of Regenerative Medicine and Biofunction, Division of Integrative Bioscience 86 Nishimachi Yonago Tottori 683-8503 Japan tel +81-859-38-6422 fax +81-859-38-6423 Email: mesh@grape.med.tottori-u.ac.jp
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