Hi Ahmad, You can report in the Reply Log the transformation of a model relative to another model with "measure rotation" <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/measure.html#rotation> Also, you can save the current overall transformation of models (including any rotations/translations of the whole scene) to a text file with command "matrixget" <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/matrixset.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Dec 18, 2020, at 10:09 PM, Ahmad Khalifa <underoath006@gmail.com> wrote:
Hello,
When I fit two maps into each other, I get the transformation matrix in the reply log, but what if the moving map doesn't converge by fitmap and require some initial manual alignment, how can I calculate the transformation matrix for that?
Best regards.