The default values of the "findclash" command are the recommended values for clashes (not contacts): <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/findclash.html> "For detecting clashes, a cutoff of 0.4-1.0 Å and a hydrogen bond allowance of 0.2-0.6 Å are recommended. The findclash command defaults are the same as the default clash criteria in the Find Clashes/Contacts graphical interface: 0.6 and 0.4 Å, respectively."
On Jul 1, 2024, at 9:04 AM, edith.gincel--- via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Thank you elaine
I saw
For detecting contacts, negative cutoff values of 0.0-(–1.0) Å with an allowance of 0.0 Å are generally reasonable (default contact criteria –0.4 and 0.0 Å, respectively).
So I thought that 0.0 was the default value and I didn't change it. Edith