
Dear Dieter, An isosurface is just the surface of a density map showing a certain level, i.e. the “surface” display in Volume Viewer. Do you have one map or two maps? I tried to ask that by saying “if I understand correctly” in my previous message. I thought you were just coloring the isosurface of one density map by the values in a second map, where the second map is gradient norm map. It might help if you attached a picture of the display and Volume Viewer dialog. “blue part” and “red part” are ambiguous. Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jun 15, 2018, at 2:51 PM, Dieter Blaas <dieter.blaas@meduniwien.ac.at> wrote:
Dear Elaine, thank you! I am sorry, but I do not understand: how do I get the isosurface? What is the command? Carefully adjusting the boundaries of the gradient norm, I got a blue and a red part. How can I make an isosurface of one of them? Is this a function in the GUI or do I have to use the command line? Can you please give an example of how to proceed!
Thank you very much, bw Dieter