Thank You You have been very helpful Rgards On Tue, May 23, 2017 at 9:31 PM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Yes, many people use Chimera to analyse results from AutoDock. You would use the “ViewDock” tool (in menu under Tools… Surface/Binding Analysis). AutoDock pdbqt file is one of the input formats.
ViewDock tool: <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/ framevd.html>
See also the ViewDock tutorial: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html>
I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On May 22, 2017, at 10:30 PM, bushra TAJ <bushraistaj@gmail.com> wrote:
Thank you Sir Actually I intend to work on AutoDock and since it need a pdb file format I wanted Chimera (but since you are saying I need pdb to load ligand file in Chimera I will probably need some other tool. Can I still get the chance to analyse my Docked results on Chimera software. Thanks for your guidance Regards