Dear Dave, When reporting a problem it is best to say what version of Chimera and what type of computer you are using. You can use "Help... Report a Bug" from the Chimera menu which will automatically include this information in what it sends to us. However, it is not necessary in this case since I believe the problem has been fixed. I tried your files in both 1.3 (latest production release, Dec 2008) and the current daily build. The production release gave the error, but in the daily build, MD Movie read the files successfully. Probably there were some cases that were not handled in the earlier version that have now been fixed. Daily builds: <http://www.cgl.ucsf.edu/chimera/alpha-downloads.html> I recommend keeping your production release in addition to one or more daily builds... just give them different names or put them in different places. Best, Elaine ----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html On Jun 28, 2009, at 7:11 PM, Dave Hassan wrote:
Hi All,
I'm trying to generate an MD move from a gromacs trajectory. I used tools > MD/Ensemble Analysis > MD movie in the toolbar. I then get the following error message:
VERSION 4.0.5 using floats version 58 generation 17 9975 atoms DICKERSON DODECAMER in water 17 atoms 456 residues <type 'exceptions.IndexError'> Exception in Tk callback