Hi Dmitry, As mentioned in my previous reply,
There is no option to do this for other types of models.
Seems like if you did this with atomic model it would give the wrong handedness of all the chiral centers. However, there is a Chimera script for doing it here: <https://github.com/asarnow/pyem/wiki/Z-Flip-for-Models-and-Maps> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 3, 2020, at 2:45 AM, Dmitry Semchonok <semchonok@gmail.com> wrote:
Dear Elaine, By ‘model’ I mean coordinate file that is build up by coot/phenix for fitting into the volume map. The ‘vop zflip’ works for the volume maps Any options how to flip the coordinate map? Thank you! Sincerely, Dmitry
От: Elaine Meng Отправлено: 2 сентября 2020 г. в 19:07 Кому: Dmitry Semchonok Копия: Chimera Тема: Re: [Chimera-users] flipping model in chimera
Hi Dmitry, It depends what you mean by "model" but for maps in Chimera there is a "vop zflip" command for flipping about the Z axis only: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/vop.html#zFlip>
There is no option to do this for other types of models.
ChimeraX map flipping ("volume flip") can use other axes, not just Z: <http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#flip>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 2, 2020, at 8:40 AM, Dmitry Semchonok <semchonok@gmail.com> wrote:
Dear colleagues, How to flip the model in chimera? Thank you! Sincerely. Dmitry