Hi Manish, I was unable to reproduce this problem, at least using the Mac version (both 1.5.3 and current daily build). I opened 1ha0, menu: Select... Sequence and entered TQNGGSNACKR, then menu: Actions... Color... blue. Only the selected part was colored blue. You could also do Favorites... Sequence to show the whole sequence and then select that part by dragging a box on that part of the sequence. After selecting, you could also try command: color blue sel ...instead of using the menu, but it is really doing the same thing. Also, I see those residues are 131 to 141, so yet another way is to use the command: color blue :131-141 If you still have trouble, however, please use "Help... Report a Bug" in the menu to report the problem. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Sep 9, 2011, at 8:16 PM, Manish Manish wrote:
Dear Chimera Developer,
I want to select a region in protein molecule and then color.
I have open a pdb file 1HA0 (attached), and then select a sequence TQNGGSNACKR (attached image) then color in blue (attached image). But this colors non selected part.
I am using ubuntu 11.04 natty, VGA compatible controller: Intel Corporation Core Processor Integrated Graphics Controller (rev 18) Subsystem: Dell Device 0447 Kernel driver in use: i915 Kernel modules: i915
and Chimera 1.5.3 .
Regards Manish