Re: [Chimera-users] Electrostatic Potential based on Poisson-Boltzmann using APBS

Dear Elaine, Very thanks for your time and consideration. I downloaded the daily build version of chimera. After using PDB2PQR in command line, status line shows that output.pqr file was generated. Then, I used APBS in command line, dx file was created. But after coloring, the colors are as black and white. I think chimera uses a pqr file other than output.pqr file which PDB2PQR has generated. After using APBS in command line, pqr, in and dx files were created in following address: C:\Users\karami\AppData\Local\Temp\tmphrfmlq How to find output.pqr file to use that as inout for APBS? Is my manner wrong? Thanks in advance, Leila