On a related note, there _is_ an error in the way Chimera handles NAMD/CHARMm DCD files _without_ periodic box information in the 1.2304-1.2318 releases. You will get a "DCD format error 9". If this bites you, send me mail and I'll send you a file with the fix that you can drop into your Chimera. --Eric On Jan 11, 2007, at 12:26 AM, juyong Lee wrote:
Hi, I'm using chimera 1.2309 version.
And I found out that MD movie module in chimera doesn't display AMBER trajectory file with periodic condition correctly.
I works well only with non-periodic condition trajectory file.
Another visualization program, VMD, has two seperated options for AMBER trajectory file: with periodic condition and not.
I prefer display style of chimera. So, I really hope to see my AMBER trajectory with Chimera.
Do you have any tips for this problem? or have plan to add the format, with periodic boundary condition. :-)
Thanks again for your great program and have a nice day!
============================================= Lee, juyong Ph.D student, Department of chemistry, Seoul National University, Korea. drfaust23@gmail.com
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users