Dear all,

After performing the structure comparison of 2 structures using the "MatchMaker" tool of the chimera software,
I need to run an alignment of the structure sequences using the "align chain sequences" tool of the chimera.

Unfortunately, I am getting the following error message in the reply log that persists for weeks:

Traceback from web service request (connection setup):
Traceback (most recent call last):
  File "C:\Program Files\Chimera 1.12\share\WebServices\opal_client.py", line 11, in __init__
    self._setup(serviceName, opalURL, sessionData)
  File "C:\Program Files\Chimera 1.12\share\WebServices\opal_client.py", line 50, in _setup
    self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line 115, in __init__
    self.wsdl = reader.open(url)
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 150, in open
    d = self.fn(url, self.options)
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line 136, in __init__
    d = reader.open(url)
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 74, in open
    d = self.download(url)
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 92, in download
    fp = self.options.transport.open(Request(url))
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\transport\https.py", line 62, in open
    return HttpTransport.open(self, request)
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\transport\http.py", line 67, in open
    return self.u2open(u2request)
  File "C:\Program Files\Chimera 1.12\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\transport\http.py", line 132, in u2open
    return url.open(u2request, timeout=tm)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 437, in open
    response = meth(req, response)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 550, in http_response
    'http', request, response, code, msg, hdrs)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 469, in error
    result = self._call_chain(*args)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 409, in _call_chain
    result = func(*args)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 656, in http_error_302
    return self.parent.open(new, timeout=req.timeout)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 431, in open
    response = self._open(req, data)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 449, in _open
    '_open', req)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 409, in _call_chain
    result = func(*args)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 1240, in https_open
    context=self._context)
  File "C:\Program Files\Chimera 1.12\bin\lib\urllib2.py", line 1197, in do_open
    raise URLError(err)
URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:590)>

Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly.  If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu.  Please
include the traceback printed above as part of the problem description.
Traceback from web application request:
Traceback (most recent call last):
  File "C:\Program Files\Chimera 1.12\share\WebServices\appWebService.py", line 48, in _initApp
    self.backend = Backend(service, url)
  File "C:\Program Files\Chimera 1.12\share\WebServices\opal_client.py", line 21, in __init__
    raise NonChimeraError("Web service appears "
NonChimeraError: Web service appears to be down.  See Reply Log for more details.
Service 'opal:ClustalOmegaService' is unavailable.  See Reply Log for more details.

Can you please help?


Thanks a lot for your time,
Chara