Hi Jing, I was not able to reproduce the problem. When I chose “N side” the side with the N atom selected moved, and when I chose “C side” the side with the C atom selected moved. If the ligand is in the same model as the part it is bound to, they should move together. In general when you have data-specific issues you should include your data, or else we cannot suggest any specific solution. If you think it is a bug, you should use menu: Help.. Report a Bug and attach any data (such as a Chimera session of the models before the joining) that is needed to reproduce the problem. Best, Elaine On Aug 13, 2016, at 10:42 AM, Jie, Jing <jiej@oregonstate.edu> wrote:
Hi Elaine, I tried both selections but the side with the selected N atom (N side) moves in either one. The N side has a ligand bound to it. Is there a way to treat the N side and its ligand as a single object so that even it moves the ligand moves with it? Thank you. Jing
On Sat, Aug 13, 2016 at 8:48 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote: Hi Jing, Just choose the other option, move on N side.
We need to change the wording in the dialog to make it more clear. By “C side” we really meant the side with the selected C atom, even though that becomes the N side of the final joined protein.
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 12, 2016, at 6:15 PM, Jie, Jing <jiej@oregonstate.edu> wrote:
Hi all, Is there a way in chimera to fix the position of one model when creating a peptide bond between two models? I selected 'move atoms on C side' but the N side chain still moves. Thanks in advance! Jing
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