Re: [Chimera-users] Chimera vs Amber, which one digresses from the average pdb rules?

Hi Francesco, Yes, I saw the lines in your mail and have reported the hydrogen name issue as a bug. We intend to completely follow the PDB format. However, fixing the hydrogen naming will not affect the issues you were having with HETATM/TER and names like 5C13, because those are already handled correctly by Chimera (according to the PDB format standard). Format issues are not limited to Chimera users, of course, but anyone who works with multiple programs! Elaine ----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html