Thanks for date shaming me!!   It works - you guys are great.  Is there any way to select certain parts of the map, if for example you just want to see the electron density of one molecule instead of all the symmetry copies?

Miriam

PS.  7 years isn't even close.

On Thu, Feb 20, 2020 at 11:56 AM Tom Goddard <goddard@sonic.net> wrote:
Hi Miriam,

  We appreciate your long use of Chimera!  That bug was fixed 7 years ago.  Time to install a new Chimera.

Tom


On Feb 20, 2020, at 11:46 AM, Miriam Gochin <mgochin@lbl.gov> wrote:

The 2F0-Fc map was created with Phenix.  I tried the "vop cover #1 atom #0" command but got the following error:

NameError: global name 'step' is not defined

  File "/Applications/Chimera.app/Contents/Resources/share/VolumeFilter/cover.py", line 9, in map_covering_box
    g = volume.grid_data(subregion = 'all', step = step, mask_zone = False)

Hoping to figure out how to make it work.

Many thanks,
---------------------------------
Miriam Gochin
Touro University California / LBL
miriam.gochin@tu.edu
707-638-5463  
_______________________________________________
Chimera-users mailing list: Chimera-users@cgl.ucsf.edu
Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users