Let me know if you'd prefer we take this offlist so we don't bore anyone else :-) Comments in-line, below. Grant
On Jun 18, 2004, at 9:51 PM, Grant Jacobs wrote:
I've tried a few things -- seems Chimera is location-dependent. I place most of my applications in subdirectories of /Applications or ~/Applications (e.g. Text, Graphics, Science, etc.) to organise things a bit. A few apps. insist on being in /Applications - Chimera seems to be one of these. Your installation notes don't indicate this explicitly, but I suppose no many people insist on being so over-organised :-)
AFAIK, Chimera isn't normally location dependent. On my OS X 10.3.4 system at home, I can launch Chimera from the desktop, from my Documents folder, and from /Applications/Science (while named Chimera-1.1951 -- to test your exact situation as closely as possible) and was able to open models and the side view in each case without problem.
Hmm. The only thing I did to get it going was to move /Applications/Science/Chimera to /Applications, so that I got /Applications/Chimera. Just realised I never moved Chimera-1.1951 itself right to /Applications; I moved the directory holding it - I quite forgot that /Chimera was my doing and not part of the installation! So I'll have to stand corrected on that. But the strange thing is that moving it did make it work and you'd really think this would have no effect. Maybe something completely unrelated is going on? Or I'm just having a bizzare week ;-) Moving /Applications/Chimera back to /Applications/Science/Chimera works now. Which is annoying in sense as I can't reproduce the original bug. It certainly didn't work on the initial installation.
Since you have found a solution that works for you, you may not want to pursue this any further. If you are willing however, you could create a guest account on your machine for our debugging use and convey the account name, password, and machine name to us privately. Then we could debug the problem without requiring much more of your time. Let us know.
I'd rather not open up my machine. If you want me to do some basic things, just let me know. I'd normally have more time, but I've just a month before heading to Europe on a round of "let see who might support my work" ;-) I'll try re-installing a copy later tonight (fortunately I keep all my installers) and do a little playing around for a few minutes.
While I'm writing, I presume Chimera insists on using its own version of python over anything installed in /usr/bin/python or whatever?
Pretty much. Several versions back, the Chimera installer would give you the option of having Chimera use the system version of Python -- but we found compatibility issues were just too much of a headache for both us and users to deal with, so the option isn't there anymore.
I can imagine. Grant -- ------------------------------------------------------------------- Grant Jacobs Ph.D. BioinfoTools ph. +64 3 478 0095 (office, after 10am) PO Box 6129, or +64 25 601 5917 (mobile) Dunedin, gjacobs@bioinfotools.com NEW ZEALAND. Bioinformatics tools: deriving knowledge from biological data Bioinformatics tools - software development - consulting - training Check out the website for more details: http://www.bioinfotools.com The information contained in this mail message is confidential and may be legally privileged. Readers of this message who are not the intended recipient are hereby notified that any use, dissemination, distribution or reproduction of this message is prohibited. If you have received this message in error please notify the sender immed- iately and destroy the original message. This applies also to any attached documents.