No joy

 


------------------------------------------------------------------------------------------------------------------------------

Professor Joel Mackay | NHMRC Senior Research Fellow

Chair, Biochemistry, Cellular and Molecular Biology Cluster

School of Life and Environmental Sciences

THE UNIVERSITY OF SYDNEY

 

A: School of Life and Environmental Sciences | Rm 674, Building G08 | Butlin Ave

The University of Sydney | NSW | 2006 | Australia

T: +61 2 9351 3906  | F: +61 2 9351 5858  | S: joelmackay

E: joel.mackay@sydney.edu.au  | W: www.mmb.usyd.edu.au/mackay/

 

From: Eric Pettersen [mailto:pett@cgl.ucsf.edu]
Sent: Saturday, 12 August 2017 3:04 AM
To: Joel Mackay <joel.mackay@sydney.edu.au>
Cc: chimera-users@cgl.ucsf.edu BB <chimera-users@cgl.ucsf.edu>
Subject: Re: [Chimera-users] Error in Windows saving a session

 

Could you try rebooting your machine?

 

—Eric

 

On Aug 10, 2017, at 4:44 PM, Joel Mackay <joel.mackay@sydney.edu.au> wrote:

 

Hi Eric

Thanks for getting back to me.

I’m just trying to save a .py file. Not sure how to save a compressed version…

I’ve tried saving in different directories, but that didn’t work either. The session contains 5 PDB files and a single .mrc file (a low resolution EM dataset). The PDB files are 5 ~40 kDa proteins, so not huge.

The disk I’m writing to has ~140 GB free out of 500.

Sounds like one of those elusive problems…

Please let me know if you’d like me to try anything else.

Best regards
Joel

 


------------------------------------------------------------------------------------------------------------------------------

Professor Joel Mackay | NHMRC Senior Research Fellow

Chair, Biochemistry, Cellular and Molecular Biology Cluster

School of Life and Environmental Sciences

THE UNIVERSITY OF SYDNEY

 

A: School of Life and Environmental Sciences | Rm 674, Building G08 | Butlin Ave

The University of Sydney | NSW | 2006 | Australia

T: +61 2 9351 3906  | F: +61 2 9351 5858  | S: joelmackay

 

From: Eric Pettersen [mailto:pett@cgl.ucsf.edu] 
Sent: Friday, 11 August 2017 6:55 AM
To: Joel Mackay <joel.mackay@sydney.edu.au>
Cc: chimera-users@cgl.ucsf.edu
Subject: Re: [Chimera-users] Error in Windows saving a session

 

Hi Joel,

            We have had this reported infrequently by other users and have had no success in tracking it down.  Can you answer a couple of questions for me?  Are you writing a compressed session file?  Is the disk you are writing to nearly full?  Thanks.

 

—Eric

 

            Eric Pettersen

            UCSF Computer Graphics Lab

 

 

On Aug 9, 2017, at 2:45 AM, Joel Mackay <joel.mackay@sydney.edu.au> wrote:

 

Hi all

Have other people seen (and solved!) this error before (below)? I’m having it crop up pretty much all the time now when I try to save a session (on my Win7 machine – running Chimera 1.11.2.

Thanks 
Joel

 

 

WindowsError Exception in Tk callback

  Function: <function command at 0x00000000155434A8> (type: <type 'function'>)

  Module: <module 'chimera.baseDialog' from 'C:\Program Files\Chimera 1.11.2\share\chimera\baseDialog.pyc'> (line: 447)

  Args: ()

Traceback (innermost last):

  File "C:\Program Files\Chimera 1.11.2\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in __call__

    return apply(self.func, args)

  File "C:\Program Files\Chimera 1.11.2\share\chimera\baseDialog.py", line 449, in command

    getattr(s, buttonFuncName(txt))()

  File "C:\Program Files\Chimera 1.11.2\share\OpenSave\__init__.py", line 264, in Save

    getattr(self, self.keepEquiv())()

  File "C:\Program Files\Chimera 1.11.2\share\chimera\baseDialog.py", line 704, in OK

    self.Apply()

  File "C:\Program Files\Chimera 1.11.2\share\OpenSave\__init__.py", line 183, in Apply

    self.command(1, self)

  File "C:\Program Files\Chimera 1.11.2\share\SimpleSession\gui.py", line 41, in _saveCB

    saveSession(paths[0], **kw)

  File "C:\Program Files\Chimera 1.11.2\share\SimpleSession\save.py", line 135, in saveSession

    os.rename(tsave, filename)

WindowsError: [Error 32] The process cannot access the file because it is being used by another process

 

WindowsError: [Error 32] The process cannot access the file because it is being used by another process

 

  File "C:\Program Files\Chimera 1.11.2\share\SimpleSession\save.py", line 135, in saveSession

    os.rename(tsave, filename)

 

See reply log for Python traceback.

 


------------------------------------------------------------------------------------------------------------------------------

Professor Joel Mackay | NHMRC Senior Research Fellow

Chair, Biochemistry, Cellular and Molecular Biology Cluster

School of Life and Environmental Sciences

THE UNIVERSITY OF SYDNEY

 

A: School of Life and Environmental Sciences | Rm 674, Building G08 | Butlin Ave

The University of Sydney | NSW | 2006 | Australia

T: +61 2 9351 3906  | F: +61 2 9351 5858  | S: joelmackay

 

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