On 10/26/22 11:48 AM, Edmund Marinelli via Chimera-users wrote:
I used SALIGN to obtain alignment / superposition of peptides. On the SALIGN webpage there is a link for Launch Chimera. When I click this I get a download of a file named "show.chimerax". Then nothing happens. Since you already asked me the same question directly, here's a summary of my previous answer to spare the Chimera folks some time:
Chimera and ChimeraX are two different programs. SALIGN outputs are for Chimera, not ChimeraX. If you have Chimera (not ChimeraX) installed, you can just open the showfile.chimerax file from within Chimera if it doesn't pop up automatically. Ben -- ben@salilab.org https://salilab.org/~ben/ "It is a capital mistake to theorize before one has data." - Sir Arthur Conan Doyle