Hi Mike, After comparing with ellipsoids from various other programs I now do see some differences. I've open a Trac ticket (#7446) for this problem so that you will be notified of any progress on the issue. I should have some kind of resolution in the next day or three. If you wanted to send along some examples of expected output I would be happy to check any fix I make against them. --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On Jul 5, 2009, at 11:37 PM, Michael K. Gilson wrote:
Hi,
Chimera and PyMol are showing very different thermal ellipsoid orientations for the same PDB file, and I have reason to believe that the PyMol display is the right one. Here are the first two lines of the PDB file I am reading in:
Atom 1 O1 CUC 1 3.345 1.613 0.172 ANISOU 1 O1 CUC 1 619 156 528 150 43 -6 ATOM 2 O2 CUC 1 -1.699 0.125 2.792 ANISOU 2 O2 CUC 1 497 355 848 128 -68 204
I would appreciate help with this because Chimera appears to provide more detailed control of the coloring of the ellipsoids than PyMol does.
I'll be happy to provide screenshots or other information.
Regards, Mike
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