Kind Regards

On Friday, May 13, 2022, Eric Pettersen <pett@cgl.ucsf.edu> wrote:

If you are in nogui mode, log output should simply go to the terminal that you are running Chimera from, and which you can redirect to a file. Is that not what’s happening?

—Eric

> On May 10, 2022, at 4:34 PM, Reeki Emrizal via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
>
> Hi
>
> I working on an automated python script to calculate the rmsd between two molecules using rmsd command. I'm using --nogui when running the script. The standard output did not show the rmsd value.
>
> When using the chimera gui, I noticed that the rmsd value is shown in the reply log. Is there a way I could save the content of the reply log through python script?
>
> I found previous post with similar issue that use:
>
> from chimera.tkgui import saveReplyLog
> saveReplyLog(path)
>
> The solution does not work for me though as the text file is empty even though there is content in the reply log.
>
> Kind Regards
> _______________________________________________
> Chimera-users mailing list: Chimera-users@cgl.ucsf.edu
> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users