[Chimera-users] matchmaker question

Dear all, I would like to write a script to compute structural alignment and show the actual, not the calculated by ksdspp, secondary structure of some pdb files. My problems are: a) *mm #0 #1 show true * shows the predicted secondary structure, not the actual. How this can be modified to show the actual secondary structure?* * b) how the typical script provided in https://www.cgl.ucsf.edu/chimera/current/docs/ProgrammersGuide/basicPrimer.h... for fn in file_names:     replyobj.status("Processing " + fn) # show what file we're working on     rc("open " + fn)     rc("mm #0 #1 ...  ?") # has to be modified to have the whole alignment in the same window? Thanks for your help, Marco Sette