On Tue, 17 Jul 2012 10:34:54 -0700 Tom Goddard <goddard@sonic.net> wrote:
Hi Robert,
Unfortunately the MSMS molecular surface calculation code has bugs and so it fails to compute surfaces for most large (>10,000 atom) PDB models. The surface calculation has essentially no chance of working with a model of 110,000 atoms such as your half-virus. That said I used the 64-bit Mac Chimera and split the model by chains and it surfaced fine -- see attached image. The Windows Chimera versions have the most surface calculation failures especially 64-bit Windows Chimera, and Mac and Linux are substantially better.
So I made the image bmv.jpg with "split #0; surf; rainbow model". ...
I swear this looks like a piece of broccoli seen from above (and through blue--or ??--colored glasses ;-) ... Kenward -- In a completely rational society, the best of us would aspire to be _teachers_ and the rest of us would have to settle for something less, because passing civilization along from one generation to the next ought to be the highest honor and the highest responsibility anyone could have. - Lee Iacocca