Dear Chimera
I am sorry to interrupt your busy schedule.
My name is Matsui, and I am a second-year master's student at a Japanese university.
Thank you for taking time out of your busy schedule to respond to my question the other day.
I am now looking at protein-ligand interactions.
We found in the paper that His 421 interacted with another ligand.
Therefore, the interaction between His-421 and the ligand.
Problem :However, no hydrogen bonds were displayed.(first figure)
I would like you to ask why this is caused.
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This is because the distance between the His-421 and OH oxygen atoms was 3.7 Å.
A ligand with a structure similar to this one in the paper formed a hydrogen bond with His-421 at 3.8 Å.
The thing I tried
The Relax H-bond constraints section was adjusted from 3.0 to 5.0.
you can show this figure when you open the attached file
Wheat: Ligand the other color:protein
H-bond parameter
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Kenji Matsui Graduate School of Tokyo University of Agriculture and Technology M22-24-16, Nakamachi, Koganei-shi, Tokyo 184-8588, Japan