Here's an old Chimera mailing list message related to your electrostatic coloring problem.  The msc command it describes is built into current Chimera versions.

    http://plato.cgl.ucsf.edu/pipermail/chimera-users/2006-November/001090.html

 Tom


Hi Everyone,

 

                I was wondering if there is a way to create a maps of partial charge and electrostatic potential that I could then overlay on top of a similar structure. The biological assembly I am working with is too large for good surface calculations so I would like to overlay these maps on the surface of a condensed structure that only includes the regions I am concentrating on.

 

Thank you,

Nikolay Rodionov



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