Hi Conrad. Thank you for your quick reply, it works ! Additionally do you if it is possible to create a 2d interaction diagram with closest residues. Best regards David ________________________________ From: Conrad Huang <conrad@cgl.ucsf.edu> Sent: Monday, April 6, 2020 12:02:09 PM To: David Ricardo Figueroa Blanco <dr.figueroa10@uniandes.edu.co>; chimera-users@cgl.ucsf.edu <chimera-users@cgl.ucsf.edu> Subject: Re: [Chimera-users] 2D diagram and CDK-Depiction.jar Hi, David. The CDK files were left behind when we upgraded our hardware. They should be back in place again. Can you please try again and see if it works? Thanks. Conrad On 4/5/2020 7:00 PM, David Ricardo Figueroa Blanco wrote:
Hi!
I am trying to generate 2d diagrams with Dockview from autodock vina outputs but I get this problem :
Web Service: cdkdepiction converts either SMILES strings or MOL2 files into 2D structure diagrams in PNG format Opal service URL: http://webservices.rbvi.ucsf.edu/opal2/services/CDKDepictionService Opal job URL: http://webservices.rbvi.ucsf.edu/appCDKDepictionService1586137005272-8075760... CDKDepictionService stderr ----- Error: Unable to access jarfile /usr/local/cdk/CDK-Depiction.jar ----- CDKDepictionService stdout ----- [no output] ----- Structure diagram generation failed; see Reply Log for more information
Any suggestion or needed program to install?
Thank you !
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