If you run Chimera in nogui mode (i.e. with the command-line flag "-- nogui") with no script file argument then standard input would be interpreted as Chimera commands. Alternatively, you could supply a script file (Chimera commands or Python) as an argument. This is basically described here: http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/options.html#nogui You could use a series of commands like: open input.pdb swapaa TYR :15.a write output.pdb to do the swapaa. --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On Jun 9, 2008, at 1:14 PM, ProtEUS wrote:
Hello all!
I am sorry if this is a dump question, but is it possible for swapaa to run fromJava server with Runtime.exec()?
Thank you very much!!
Andreas, Greece. _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users