Yeah, the Ramachadran plotting in Chimera doesn't really work with trajectories in the way you want (it can only plot all the residues of the current frame). The Ramaplot plugin of VMD does pretty much exactly what you want: http://www.ks.uiuc.edu/Research/vmd/plugins/ramaplot/ --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On May 26, 2015, at 11:51 AM, "Elena Lilkova" <elilkova@phys.uni-sofia.bg> wrote:
Dear Chimera community,
First I would like to just say that I am new to Chimera. I made a MD simulation of a protein using NAMD. Now I am interested in generating a Ramachandran plot for the whole trajectory, but only for a specific selection of my protein, namely three specific residues. I fail to succeed. Could anyone probably suggest a solution?
Elena Lilkova
elilkova@phys.uni-sofia.bg
PhD student, Atomic Physics Department, Faculty of Physics, University of Sofia "St. Kliment Ohridski"
5 James Bourchier Blvd. 1164 Sofia, Bulgaria
Elena Lilkova
elilkova@phys.uni-sofia.bg
PhD student, Atomic Physics Department, Faculty of Physics, University of Sofia "St. Kliment Ohridski"
5 James Bourchier Blvd. 1164 Sofia, Bulgaria
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