You don't say what you did for Coot, but it should be possible to setup 3D stereo in a way that works for both Chimera and Coot.

For the best 3D stereo, Chimera depends on the graphics driver being configured to support quad-buffered OpenGL stereo.  For NVIDIA graphics cards on Linux, carefully read the installation nodes.  On Ubuntu, you would run:

    xdg-open /usr/share/doc/nvidia*/html/index.html

to see the installation nodes.  In might be in a different location on RHEL.  And if might be a README file instead of HTML files.

Read the installation notes carefully and do what it says :-).  In particular, look at Appendix B, X Config Options, and the Stereo option.  You might need to create a /etc/X11/xorg.conf file using nvidia-xconfig so you can edit it and add a line for the Stereo option.

I don't see any conflict between what I just said and Coot's instructions at http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Stereo, so I hope seeing it a second time in a different way helps.

    Good luck,

    Greg

On 06/11/2016 01:32 AM, abhisek Mondal wrote:
Hi,

  I'm using Chimera - 1.10 on a RHEL-7.x operating system (64-bit) with 128 GB of DDR3 RAM, 2.3 GHz Intel Xeon processor, Nvidia Quadro K5200, ASUS VG278 monitor (3D compatible). 
  
  I have successfully configured Coot to run in stereoscopic view in the same machine but Chimera is giving me a hard time regarding the same.

  Any suggestions regarding this issue will be highly appreciated.

Thank you.

--
Abhisek Mondal
Research Fellow
Structural Biology and Bioinformatics Division
CSIR-Indian Institute of Chemical Biology
Kolkata 700032
INDIA


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