Hi Elaine,
The problem I have is actually not with chimera itself. I can
display all the models etc nicely within it. However, I want to make
now a PDB file of a multi-protein complex in a format that can be
deposited in the PDB database. Then I run into problems if the models
are separated by Model ENDMDL lines or have chains with the same letter
identifier. I was hoping to be able to generate a multi-protein PDB
file from my chimera fitting without having to manually edit a lot of
lines in the multimodel PDB file. Any suggestions on how to best do this
would be appreciated.