The algorithm code is in fitmap.py and the command parsing is in fitcmd.py. There is a Python script fitnogui.py showing how to use this on the Chimera Python scripts page

You probably want to use this with the Chimera Python “chimera --nogui fitnogui.py” because it uses C++ compiled libraries compiled for the Chimera Python.

On Oct 25, 2016, at 5:48 AM, Michał Kadlof <m.kadlof@cent.uw.edu.pl> wrote:

Is there any pythonic way of running fitmap tool? I would like to use it as a function that return parameters that I can assign to variable without parsing the output. I didn't find anything similar in Midas module.

--
best wishes,

Michał Kadlof <m.kadlof@cent.uw.edu.pl>

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