Hi everyone,
sorry to ask such a basic question. I have a cryo EM density map 3.2 A of a icosahedral molecule and I already build the model of the monomer. I would like to place the remaining 59 copies and calculate the BioMT matrix
for it. I started playing around with the sym command, but I couldn’t get it working nicely. It’s probably a problem of the coordinate system, but I couldn’t figure it out. Than I thought there must be an automatic way and I tried Multifit but also this failed
me miserably as the runs fail continuously with “stderr”. So I was wondering is there a protocol to do this?
Already thank you for any suggestions,
David
Dr. David Haselbach
Max-Planck-Institute for biophysical Chemistry
Department for structural Dynamics
Am Fassberg 11
37077 Germany
Tel. +495512011302