Hi Francesca,

There is a web service for PDB2PQR and APBS, so there is no need to install them.

http://kryptonite.nbcr.net/pdb2pqr/

http://ws.nbcr.net/opal2/CreateSubmissionForm.do?serviceURL=http://localhost:8080/opal2/services%2FApbsParallelOpalService


Thomas

On 26 June 2012 16:48, <cantini@cerm.unifi.it> wrote:

Regarding these programs
Do you know how they worked and which are the best? I tried to installed them but without success .

Francesca

sette@uniroma2.it ha scritto:



Chimera don't make calculations of electrostatic potential.
You can use other softwares for this, like APBS or Delphi.

Marco


George Tzotzos <gtzotzos@me.com> ha scritto:

Hi everybody,

Assuming that one knows the precise residues constituting a binding site, it is possible to calculate the electrostatic potential of these residues only? If yes, how?

Thanks for any advice

George
_______________________________________________
Chimera-users mailing list
Chimera-users@cgl.ucsf.edu
http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users




Dr.Marco Sette, Ph.D.

Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
e-mail:        sette@uniroma2.it
e-mail:        m77it@yahoo.it
Tel.:          +39-0672594424
Fax:           +39-0672594328

www.rete29aprile.it


----------------------------------------------------------------
Invito da parte dell'Ateneo:
Il tuo futuro e quello della Ricerca Scientifica hanno bisogno del
tuo aiuto. Dona il  5 x mille all'Universita' di Roma Tor Vergata
codice fiscale: 80213750583 http://5x1000.uniroma2.it


_______________________________________________
Chimera-users mailing list
Chimera-users@cgl.ucsf.edu
http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users




----------------------------------------------------------------
This message was sent using IMP, the Internet Messaging Program.

_______________________________________________
Chimera-users mailing list
Chimera-users@cgl.ucsf.edu
http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users



--

======================================================================

Thomas Evangelidis

PhD student

Biomedical Research Foundation, Academy of Athens

4 Soranou Ephessiou , 115 27 Athens, Greece

email: tevang@bioacademy.gr

          tevang3@gmail.com


website: https://sites.google.com/site/thomasevangelidishomepage/