On May 5, 2014, at 4:07 PM, chang YG <changyg2008@gmail.com> wrote:

Hi Eric,

Thank you very much for the quick response. I can't wait to try the script you provided.

For the RMSD, I have two conformers for the same sequence. If I encounter any problem, I will give it my best shot before posting questions.

In that case it should be easy:

from chimera import openModels, Molecule

m1, m2 = openModels.list(modelTypes=[Molecule])

import Midas

rmsd = Midas.rmsd(m1.atoms, m2.atoms)

etc.

--Eric

Yonggang

On Mon, May 5, 2014 at 3:59 PM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:

On May 5, 2014, at 3:57 PM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:

print>>f, a1, a2, diet

Stupid auto-correct spelling. "diet" should be "dist".

--Eric