Hi Judith, No idea -- to better ask the question, would have been helpful to attach an image and say what you mean by "analyse." If you are finding H-bonds, for example, then the H-bonds might be shown with cyan lines between donors and acceptors, but if you chose to run such an analysis, I don't think the lines would be mysterious. <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond.html> Also if you selected something with Ctr-click or any of several other methods, then the selection is outlined in green. <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/selection.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 24, 2020, at 10:18 AM, Schaf, Judith (2017) <Judith.Schaf.2017@live.rhul.ac.uk> wrote:
Hi everybody,
I have a quick question: when I analyse the results of a molecular docking assay (performed with SwissDock) on Chimera I sometimes see a green line between the protein and the ligand.
Does someone know what this line represents?
Thank you, Judith