Hi J-F, Do you mean if the correlation of a molecular model with a map is 0.9 then color the whole map blue? Or do you want to color just the region of the map near the molecule blue. Or do you wan the map be colored in different colors, each representing the local correlation of the molecule to the map near the point where that color is shown? If this last case, how would you define the "local correlation"? Probably you would want to color the molecule in that case not the map since it would give a better view of the whole volume rather than just its envelope. Tom -------- Original Message -------- Subject: [Chimera-users] coloring 3D maps according to local cross-correlation fit of docked PDB structures From: Jean-Francois Menetret To: chimera-users@cgl.ucsf.edu Date: 10/18/12 6:24 AM
Dear users, we would like to color aCryo-EM map according to the cross-correlation fit of docked PDB structures. Is that possible in Chimera ? Best wishes J-F Menetret