Hello Mr. Petterson,I was looking for some help with using UCSF chimera and I was wondering if I can directly email you my question. If this is not the appropriate address, my apologies, and could you point me in the appropriate direction for support?
My issue is that I want to automate the process of creating and saving structure based sequence alignments. It has been simple to open the file and align them, but I am not sure how to save the .fasta alignment file out. Here is what I have so far:for fn in file_names:replyobj.status("Processing: " + fn)rc("open " + fn)rc(mm #0 #1 show true)rc("close " + fn)The bold line is the problematic one - is there any way to write out the resulting alignment file in a programmatic fashion?
Eric Pettersen
UCSF Computer Graphics Lab