Hello:

Very new to Chimera and to modeling in general.

1.) Does the Molecular Dynamics Tool allow simulation of a protein ligand complex?

2.) Does a protein ligand docking pose generated by Autodock, for example, qualify as a 'model' that can be read by the MD Tool and be employed in a MD run?

Is there a comprehensive tutorial or manual discussing in detail the setting of MD run within Chimera?

Any help would be appreciated. Thanks.

Edmund R Marinelli, PhD