Dear Jatin, Chimera itself does not write pdbqt format. I recommend you save the structure from Chimera in PDB format <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html#pdb> ... and then (not using Chimera any more) obtain and use the prepare_receptor4.py script from Autodock Tools as described in this page: <http://autodock.scripps.edu/faqs-help/how-to/how-to-prepare-a-receptor-file-...> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 9, 2020, at 3:55 PM, Jatin Kashyap <jk435@njit.edu> wrote:
Dear Chimera Community Members,
I am new to this code, and tried to navigate through this wonderful piece of code by myself. However, I am not able to find a way to save the relaxed system(relaxation performed in UCSF Chimera) in pdbqt format.
Can anybody please help me to understand how I can do it, OR am I doing something completely wrong?
Thank you for your time, and efforts.