Already answered a few days ago, please see http://www.cgl.ucsf.edu/pipermail/chimera-users/2008-August/003030.html On Aug 28, 2008, at 9:20 PM, Monica Tello wrote:
Dear all,
I am trying to save a Figure that shows my ligand with its surface around partly clipped, and use POV Ray. The problem is that POV Ray modifies the output of the figure: the final picture shows the full surface around the ligand, although on the screen I designed it so that you can see the surface partially clipped. If I use transparency on the surface, POV Ray also ignores this and shows still the full surface around the ligand, and opaque. If I don´t use POV Ray, then I get the figure as seen on the screen!
Why is POV Ray ignoring the surface as I want it? It ignores any kind of alteration of the surface! I was using the default POX Ray settings, although by now I have tried to change some of the ones I thought may be related to this, based on the Chimera Manual, but I haven´t had any success.
Can anyone help me with this? It will be very much appreciated!
I include an example of the same figure saved with and without using POV Ray. The one without using POV ray is the one that looks like what I designed on the screen.
Thank you very much!!
Monica
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------------------------------------------------- Monica Tello Soto, PhD The Salk Institute for Biological Studies Chemical Biology and Proteomics 10010 North Torrey Pines Road San Diego CA92037 858 453 4100 x1946 tello@salk.edu ------------------------------------------------
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