27 May
2010
27 May
'10
9:53 p.m.
On May 27, 2010, at 12:27 AM, Amitoj Chopra wrote:
Is there any way to use the R script and bio3d package to open a pdb with Chimera using R? Thank you.
Hi Amitoj, If R can run external system commands then this is possible. Use bio3d to write a PDB file and then use R to start Chimera from the command line with the PDB file name as an argument, as documented here: http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/startup.html If you don't know how to run external commands from R, you would probably have to ask about that on the R mailing list. --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu