This particular bug was fixed on the 19th — if you get the current daily build you won’t get this “coercing to Unicode” error. —Eric Eric Pettersen UCSF Computer Graphics Lab
On May 20, 2017, at 3:20 PM, P. Buscemi <busce004@umn.edu> wrote:
Dear Chimera,
This is the other common error which strangely appears to occur on my PC much more frequently than on my iMac – using the same mol2 file <image001.png>
From: Paul Buscemi [mailto:busce004@umn.edu] Sent: Saturday, May 20, 2017 5:02 PM To: chimera-users@cgl.ucsf.edu BB Subject: Input from Avogadro, solvation.
Dear Chimera,
Three basic questions:
I’m using Avogadro to construct my models and import as mol2 or pdb types. I often obtain messages as
<PastedGraphic-1.png>
or that the atom is not “listed” .
Is there a preparation I can use for transfer of models ? Alternatively do you suggest any other program to construct models ?
2) If I use Tools to solvate a model, should I use the “Start solvate tool” under MD and/or check “Periodic Boundary Conditions.
3) Im considering building a multicore system ( two 16 core Xeon’s) as a 64 bit system would Chimera take advantage of the multi-core system ? Would the upgrade funds be better spent on memory ?
Regards,
Paul Buscemi, UMN BICB _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users