For computing FSC it should not matter what resolution you use with molmap because that resolution value will just scale the Fourier shells and should not alter the correlation with a shell. But I would test to make sure this is the case. Also if you are at very high resolution (3 - 4 Angstroms) I am not sure the molmap map is good enough an approximation since it simply puts a Gaussian at each atom position with all Gaussians having the same standard deviation.

On Jan 22, 2016, at 5:25 AM, 李智海 < wrote:

Maybe now I find the answer to my own question, the command combinations molmap onGrid and vop resample can solve my problem.

Zhihai
On Jan 22, 2016, at 9:00 PM, 李智海 wrote:

Hi,

Here I want to calculate a model-to-map FSC curve. If I am not wrong, firstly I am supposed to convert the pdb file to a density map. So I was just wondering in Chimera, how to use command molmap to generated a map with the same pixel size and dimensions as the corresponding map?

Any help will be high appreciated.

Best,

Zhihai Li

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